Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs73494914 | chr9:93923108 | G/A | 6.22E-5 | 399 | 14.1 | 17.97 | 19.2 | KM Plot |
| LGG | rs73494917 | chr9:93923120 | T/G | 6.22E-5 | 399 | 14.1 | 17.97 | 19.2 | KM Plot |
| LGG | rs73494920 | chr9:93923153 | G/C | 6.22E-5 | 399 | 14.1 | 17.97 | 19.2 | KM Plot |
| LGG | rs73575745 | chr9:126949230 | T/G | 1.69E-6 | 406 | 15.37 | 10.73 | 12.92 | KM Plot |
| LGG | rs73575749 | chr9:126949779 | G/T | 1.25E-6 | 407 | 15.37 | 11.1 | 12.92 | KM Plot |
| LGG | rs73591936 | chr16:67761825 | G/A | 2.16E-11 | 407 | 15.17 | 18.37 | 6.47 | KM Plot |
| LGG | rs73615439 | chr16:76261580 | T/C | 7.07E-7 | 405 | 15.37 | 15.63 | 5.85 | KM Plot |
| LGG | rs7364130 | chr22:43249200 | C/T | 0.000117 | 407 | 2.98 | 14.67 | 15.57 | KM Plot |
| LGG | rs73650935 | chr9:93917658 | T/C | 4.34E-5 | 397 | 14.4 | 19 | 19.2 | KM Plot |
| LGG | rs73651574 | chr9:94605641 | G/T | 0.000174 | 407 | 15.2 | 16.38 | 17.55 | KM Plot |
| LGG | rs73651582 | chr9:94610697 | G/A | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs73651583 | chr9:94613155 | G/A | 6.99E-5 | 407 | 15.18 | 16.47 | 17.55 | KM Plot |
| LGG | rs73651584 | chr9:94618265 | T/A | 6.75E-5 | 406 | 15.18 | 16.62 | 17.55 | KM Plot |
| LGG | rs73729685 | chr6:36011073 | G/C | 1.0E-9 | 406 | 15.67 | 14.95 | 6.15 | KM Plot |
| LGG | rs73729698 | chr6:36022641 | C/G | 0.000171 | 399 | 15.63 | 13.87 | 5.3 | KM Plot |